PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g31340
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LFY
Protein Properties Length: 438aa    MW: 48370.7 Da    PI: 6.4467
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g31340genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY362.76.1e-11112981282
     FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap.......leaaaaaaarklr........eleelfkayGvryltvakiaelGftvstLvdmkde 84 
                 mdpeafsaslfkwdpr a+ +pp+rll     ++ p       +     a a+++r        +leelf+ayG+ry+t+akiaelGftv+tL+dmkde
  CA03g31340   1 MDPEAFSASLFKWDPRGAM-PPPSRLLDXXXPPPLPppppplsT-----APAYSIRssttrglgGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDE 93 
                 9**************9877.667777766665554444444431.....223333333344666*********************************** PP

     FLO_LFY  85 elddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeg.lseepvqe.ekeaagsggeglgeaelvaaeekks 181
                 eldd+m+sls+ifr++llvGeryGikaa+rae rrleeee +++r ++ls+  +++ldalsqe+ lseepvq+ e+eaagsg  ++ +a++ +  + k 
  CA03g31340  94 ELDDMMNSLSQIFRWELLVGERYGIKAAIRAEWRRLEEEE-ARRRGHILSDGGTNVLDALSQEVgLSEEPVQQhEREAAGSGTWEVVAASAGGGGRLK- 190
                 **************************************88.88888999999999********55******996777899988886666666665444. PP

     FLO_LFY 182 eeekkkaskk.kqkrkkkkelkse....ededeeeeededeeg..........sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlq 265
                 ++++kka ++ +++r  + e   e     d+dee        +          +g + +erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+q
  CA03g31340 191 QRRRKKAGATgRERRGMSGEDDDEteefGDDDEE--------NineaggcgggGGGGTSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLVQ 281
                 4444444343255555544433333333222222........22223344332444445**************************************** PP

     FLO_LFY 266 vqkiakerGekcPtkvt 282
                 vq+iakerGekcPtkvt
  CA03g31340 282 VQNIAKERGEKCPTKVT 298
                 ****************9 PP
2FLO_LFY247.46.3e-76310417279386
     FLO_LFY 279 tkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqL 377
                 t vtnqvfryakk+gasyinkPkmrhYvhCYalhcLde+asnalrrafkergenvGawrqacykplvaiaa+qgwdid++fnahprL+iWYvPtkLrqL
  CA03g31340 310 TIVTNQVFRYAKKSGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKERGENVGAWRQACYKPLVAIAAQQGWDIDSIFNAHPRLAIWYVPTKLRQL 408
                 77************************************************************************************************* PP

     FLO_LFY 378 Chlerskas 386
                 Ch ers+a+
  CA03g31340 409 CHSERSNAA 417
                 ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.5E-1981417IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDPEAFSASL FKWDPRGAMP PPSRLLDXXX PPPLPPPPPP LSTAPAYSIR SSTTRGLGGL  60
EELFQAYGIR YYTAAKIAEL GFTVNTLLDM KDEELDDMMN SLSQIFRWEL LVGERYGIKA  120
AIRAEWRRLE EEEARRRGHI LSDGGTNVLD ALSQEVGLSE EPVQQHEREA AGSGTWEVVA  180
ASAGGGGRLK QRRRKKAGAT GRERRGMSGE DDDETEEFGD DDEENINEAG GCGGGGGGGT  240
SERQREHPFI VTEPGEVARG KKNGLDYLFH LYEQCREFLV QVQNIAKERG EKCPTKVTLL  300
FSPIYVIVIT IVTNQVFRYA KKSGASYINK PKMRHYVHCY ALHCLDEDAS NALRRAFKER  360
GENVGAWRQA CYKPLVAIAA QQGWDIDSIF NAHPRLAIWY VPTKLRQLCH SERSNAAAVG  420
SNSVSGGGVV ADHLPHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1052414343192PROTEIN LEAFY
2vy2_A1e-1052414343192PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that act to specify determinacy in the progenitor cells for both flowers and leaves.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0002540.0EU000254.1 Capsicum annuum FLO/FLY protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563047.10.0PREDICTED: floricaula/leafy homolog 1 isoform X1
SwissprotQ405050.0FL2_TOBAC; Floricaula/leafy homolog 2
TrEMBLA0A2G3A2W80.0A0A2G3A2W8_CAPAN; Uncharacterized protein
STRINGXP_009780578.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-103floral meristem identity control protein LEAFY (LFY)