PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g31360

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 180aa MW: 21218.4 Da PI: 6.3047

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g31360	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.2	1.2e-09	10	59	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50 ri + ++++v + kR++ + KKA+ L +LCd+e+ + fs+ +++++ ++ CA03g31360 10 RIVDLRKKKVLLDKRLESLYKKAKHLEILCDIEIGMFFFSPgDQNIFAWP 59 6778889999*****************************98455666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0065	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.11	1	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.94E-12	8	91	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-9	10	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MTKMGVRPSR IVDLRKKKVL LDKRLESLYK KAKHLEILCD IEIGMFFFSP GDQNIFAWPS 60 LTQATDRVKN YLDFFDKQRP IKMVKHEDFL QSVLNAKEDK INQLEKIVEK KEIEYNFNQL 120 VEEIKRFDEL EVREIKALIN LFAVKRAQLD ERAKQLNENV ETEIDSNDYN DGKENEGHL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016566678.1	1e-123	PREDICTED: agamous-like MADS-box protein AGL66
TrEMBL	A0A2G3A2V7	1e-126	A0A2G3A2V7_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400014105	1e-54	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	6e-10	AGAMOUS-like 96