PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g32220

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 180aa MW: 19782.4 Da PI: 8.702

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g32220	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H CA03g32220 67 FSCNYCQRKFYSSQALGGHQNAH 89 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.86E-7	64	94	No hit	No description
PROSITE profile	PS50157	11.427	67	94	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MEVQASEQIS NNNQTTQDDQ ENDDLFLDLS LDHGPKSNII PTSSSDASRA ASNNNNNNNN 60 ESEPRIFSCN YCQRKFYSSQ ALGGHQNAHK RERTIAKRGQ KISSSAAFGY DKYSSMASLP 120 LHGSFNRSLG IQVHSMIHKP TISTTFGAPT LYGHPGWSIR RPIDQQXXXX XGQKATTAT*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562909.1	1e-121	PREDICTED: zinc finger protein 1
TrEMBL	A0A1U8G4I9	1e-119	A0A1U8G4I9_CAPAN; zinc finger protein 1
TrEMBL	A0A2G3CZF7	1e-119	A0A2G3CZF7_CAPCH; Zinc finger protein 4
STRING	Solyc03g117070.1.1	4e-87	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5827	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-36	C2H2 family protein