PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g33540
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 327aa    MW: 37178.9 Da    PI: 8.3482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g33540genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.4e-08168215455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  CA03g33540 168 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAGMLDEIINYVQSLQ 215
                 8*************************8....355999999*******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.53E-9162219No hitNo description
SuperFamilySSF474597.72E-16162232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.027164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15164226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-5168215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MADHQFTSDI QNCITNNSPF PLSNFDSSID FMNQFPDMMT IPCSSDMSSF NLHSSLEFSH  60
ENIFNQVAEF PGNLQEIFQG NFQQGDAKIN AMENNLPRND NINESKKRKK IDTPESSSAY  120
SSPAVSATGT KRRNSKGRGN KVKSNEKEEE KPSDVVHVRA KRGQATDSHS LAERVRRGKI  180
NERLRCLQDI VPGCYKTMGM AGMLDEIINY VQSLQNQVEF LSMKLTAASS YYDFNSESDI  240
LVALQRAKAY EALKMQKMKK EIGCEELSSN QVGPYDHNFG SYPMLXRFST IFFFFLLLIK  300
FSIKLFPTWC YTYVIFVHNG KKIRNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567559.10.0PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK75e-60BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A1U8GHI60.0A0A1U8GHI6_CAPAN; transcription factor BEE 3-like
STRINGPGSC0003DMT4000146561e-153(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-59BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]