PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g33840

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 112aa MW: 12570.5 Da PI: 8.3141

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g33840	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	23.2	9e-08	16	63	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie + r v skR++ +l Ae LS+ ++aev v++f + gk y CA03g33840 16 LIECEKARVVACSKRKKALLEYAEKLSTRTGAEVGVMLFTTGGKPCSY 63 57888999*******************************999986666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-10	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.881	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.12E-18	8	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-7	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-10	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-7	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-7	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MAKRAEKGRQ KIEMKLIECE KARVVACSKR KKALLEYAEK LSTRTGAEVG VMLFTTGGKP 60 CSYASTSIDE IADKFFKVKL EDRQCNLDEG KSDLFEVFEE LQKETQALEA R*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016541016.1	2e-35	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A2G3A3A5	3e-73	A0A2G3A3A5_CAPAN; Uncharacterized protein
STRING	Solyc03g119680.1.1	6e-34	(Solanum lycopersicum)
STRING	PGSC0003DMT400097081	3e-34	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	2e-15	AGAMOUS-like 29