PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g33930
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 351aa    MW: 38660 Da    PI: 7.9305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g33930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-192475156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                +++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a++ l+g+
  CA03g33930 24 PRFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 75
                6799******.7*********....4456*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.03E-302482No hitNo description
PfamPF008473.2E-132474IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-202583IPR016177DNA-binding domain
SMARTSM003801.3E-342588IPR001471AP2/ERF domain
PROSITE profilePS5103220.4682582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-292582IPR001471AP2/ERF domain
PRINTSPR003671.1E-72637IPR001471AP2/ERF domain
PRINTSPR003671.1E-74864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MKQPATQPSD GIRARRKPSS RGHPRFVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAED  60
AARAYDQAAR TLRGANARTN FELPASDPHQ GSSILENSEP FNFEEACRTD EPENGLVGAL  120
KAKLFNSKNS RSFIQAYASN TNCHLVSKTK PSVPILEIKK TASQTGQAEK LRKRGHTTHV  180
NSIGQGKNYS ENLFSGNHNL DYISLMRNDC QPVISSSQCQ NNQWDRGTNS AIMWVNEQGR  240
LPWEEPQMSR GHNEVSFSTT NNYTNTDIFG GGNSTTACTW PVSVSEPTVN LSTFGEADVL  300
NGPMMMPHMN GLTQTASVPI EQQLLQFETG LWGAGENATW DPFLLSSVLG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1523901274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-159HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-159HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015161747.10.0PREDICTED: ethylene-responsive transcription factor ERF034-like
TrEMBLA0A2G3A3B30.0A0A2G3A3B3_CAPAN; Ethylene-responsive transcription factor LEP
STRINGPGSC0003DMT4000143240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118691819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-18related to AP2 11