PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g00350

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 184aa MW: 20486.4 Da PI: 6.2833

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g00350	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40	5.2e-13	12	52	5	45
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ks + fsk r+ + KKA LSvLC++e a++ifs tg+ CA04g00350 12 QKSSEDIVFSKKRQALCKKAMDLSVLCGIEFAILIFSVTGE 52 67778899******************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.9E-5	4	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-14	10	76	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.213	11	60	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-12	13	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-6	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-6	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MKESGDRKLQ KQKSSEDIVF SKKRQALCKK AMDLSVLCGI EFAILIFSVT GEPFIFGKPD 60 AELVVDHFLK AKQATECSSS CRATVEKICE HTRHPRMDQN KKVPIDDKGK GKAIEENSEC 120 STWKSVDGTD SETLEKQLTQ EIESFESDLI KEINELKLKI SAKDTESALK VISSTTPSNW 180 LSL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016571385.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A2G2ZL24	1e-129	A0A2G2ZL24_CAPAN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G66656.1	3e-13	AGAMOUS-like 91