PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g00700
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20917.6 Da    PI: 6.8105
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g00700genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.62.5e-111558144
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                k+ie +  r +tfskRr g+ KKA+EL    d++  +++ s+t 
  CA04g00700 15 KKIEKYVDRCTTFSKRRSGLYKKASELVRENDVDLGIVLTSPTE 58
                689************************99999999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.582757IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-11768IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-18881IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-7929IPR002100Transcription factor, MADS-box
PfamPF003197.1E-141665IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-72944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEGKKTAGRQ KIPLKKIEKY VDRCTTFSKR RSGLYKKASE LVRENDVDLG IVLTSPTEAE  60
KVYSFIHPTH NAVIDRFMNP TQEFDLGEHL VAENTRKKVN QLNDRLNELD RREKIAKDRM  120
TSLSEMNKTR EKSRWESIDQ LNADDIMKFE AWLDVGEVML KDQLREASSS SSQSPPEDAD  180
I*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571381.11e-132PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2G2ZKZ01e-131A0A2G2ZKZ0_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000878139e-67(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.13e-20AGAMOUS-like 57