PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g01070
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 403aa    MW: 45810.7 Da    PI: 5.0309
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g01070genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.9e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+ye+++d++++ ++sws+n++sf+v ++  fa+++Lp+yFkh+nf+SF+RQLn+YgFkk++ e+         weF+++ F +g+ +ll++i 
    CA04g01070  14 FIAKIYEMVDDPSTDPIVSWSSNNKSFIVRNPPVFARDLLPRYFKHNNFSSFIRQLNTYGFKKIDPEQ---------WEFANDDFLRGQPHLLKNIY 101
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    CA04g01070 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-37798IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.71E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.0E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDEAPCSTNA LPPFIAKIYE MVDDPSTDPI VSWSSNNKSF IVRNPPVFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFKKIDPE QWEFANDDFL RGQPHLLKNI YRRKPVHSHS AQNTHSVSSA  120
LTESERHGYK EDIEKLKREN ELLHSELHRH KQDHQGLEMQ TQVLTERVQQ VKDQQKNVLF  180
TLARVINKPG LALSLMPQLE MNERKRRLPG NTFLYNKTGF QDNQPSSSEN STRENTEPTS  240
LLTLNKEALD QLESSLTNWE HILYDTDQDA VRRSSSMDLD ESISCADSPA MSYPQLTVDV  300
GSKVSGIDMN SEPNGNATPD VTPPENRVET ASNVPTGVND VFWEQFLTEN PGSTTDVKAE  360
TEDTESKISE SKTVENGKFW WNTKTVNSLT EQLEHLTPAD RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-231110326129Heat shock factor protein 1
5d5v_B1e-231110326129Heat shock factor protein 1
5d5v_D1e-231110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0146190.0BT014619.1 Lycopersicon esculentum clone 134122F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557508.10.0PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A1U8FMF70.0A0A1U8FMF7_CAPAN; Uncharacterized protein
TrEMBLA0A2G2XWT90.0A0A2G2XWT9_CAPAN; heat stress transcription factor A-4a-like
STRINGPGSC0003DMT4000714870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-108heat shock transcription factor A4A