PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g01240
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 95aa    MW: 10848.5 Da    PI: 10.432
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g01240genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.55.5e-111663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie +  r+ tfskRr g+ KKA+EL    d++  +++ s+++k y +
  CA04g01240 16 KIEKDVDRYSTFSKRRSGLYKKASELVREHDVDLEIVLSSPSDKPYAF 63
                59999*********************9999999999999999887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.348767IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-12766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-19878IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-9929IPR002100Transcription factor, MADS-box
PfamPF003198.1E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-94465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MEGKKTTGRR KIPLMKIEKD VDRYSTFSKR RSGLYKKASE LVREHDVDLE IVLSSPSDKP  60
YAFVHPTHNA VIDRFMNLKT DLGDQIAAEK SRKK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540648.12e-47PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_016553678.12e-47PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G2YUK52e-48A0A2G2YUK5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000878132e-37(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-20AGAMOUS-like 61