PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g01820
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 675aa    MW: 74975.5 Da    PI: 6.4781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g01820genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06209228525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C ffar G+C  G++C+F H
  CA04g01820 209 RCEFFAR-GWCIKGNSCRFLH 228
                 5******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.497204231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5205228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MWGEGLEIFY YLMNVDPGDI SLSEMKFSDD ITVKAEGWCV IRGYKSEEKT GSSSKNRTDG  60
NQILEPLGLE QHLRPAFSTQ QEPVANLLQH TPLIKGGNDS CRISNSDETR ERIDGKRILI  120
NSDVQASGCE CGETNTKRIQ PFGHELDAEI LTDVKGKEAV GVQFTEGGDQ EAVNDLKQTS  180
RRLDVLKTRQ RSLSPAADSR GGSKRLAMRC EFFARGWCIK GNSCRFLHIK EHVTSHEKDG  240
SLDETMMKSK IADDKGLEEN CKTSVLDGSS DSVQSAVRSG ENLKLREELY MRTGGPSSTP  300
DIGRESLGCN PYLAAYSASS SQFLKDGSLH KNSLHHDLRH CSSSRKVDAL DDQRLLDSSQ  360
EYSSSRSTSL QHKSSAFPSS KARLSQIDLS RDTRHSSDYR TVGSFDDWEP SVPFRPSFLL  420
TQMIGFPESL YDPIRDSIDQ SNVGDGPSKF STSGKGGSVL TKHMQANADP VSTGTLGPEQ  480
SSNKVPISGQ IHHRDILPDN LSDKDLPSNE TDTADTAVAH QENMNTSSKE EKLSSSANLK  540
GVTKADKFNL STELLHSRPR KKTHLESERL RQGNEIDTDW KTDRSVNKES RVMKQFHAAL  600
VEFVKELLRP TWSEGLMSKD AYKMIVKKTV DKVEHSLHPN QIPNTAESIE EYFDISQPKL  660
AKLIEAYVEK YGKS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016570511.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
RefseqXP_016570512.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X2
TrEMBLA0A2G2WWF70.0A0A2G2WWF7_CAPBA; Uncharacterized protein
STRINGSolyc03g006350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-28C3H family protein