PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g02940

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 225aa MW: 25618.5 Da PI: 6.1267

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g02940	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.5	7.2e-06	119	156	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L++A++YI+ L CA04g02940 119 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIDYINFL 156 67788899******998.....8*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.201	107	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.48E-7	117	160	No hit	No description
SuperFamily	SSF47459	5.76E-12	117	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-9	117	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0077	118	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
QEVLTNSSQN YQHQNELMRN FSSISNQDFT NYYSNLIQTL FDSANDDHNQ EQQPQQSLFA 60 NNNNPPINDF EPSLPKFNIE EIGESKSRLS IITKNSTNEP TYKRQRIETP SPLPAFKVRK 120 EKLGDRITAL QQLVSPFGKT DTASVLQEAI DYINFLHDQV NVLRTQFVKN GSSTQHQQVK 180 EQEGLLKRDL RSKGLCLVPI SSTFPIVAET TMDFWTPTFG GTFR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016571749.1	1e-164	PREDICTED: transcription factor bHLH112-like
Swissprot	Q8GXT3	2e-52	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A1U8GUE7	1e-162	A0A1U8GUE7_CAPAN; transcription factor bHLH112-like
STRING	Solyc03g031450.2.1	9e-97	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]