PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g06370
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YB
Protein Properties Length: 73aa    MW: 8346.78 Da    PI: 8.4894
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g06370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB49.88e-1626675394
       NF-YB 53 kcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
                 + r++rkt ngd+l+wal+ lGfedy+eplk yl +yre+ 
  CA04g06370 26 TSIRKRRKTTNGDNLIWALTILGFEDYIEPLKGYLIRYREVI 67
                566899**********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.12E-8667IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-102766IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MDVEVLVCGL AWDFKCVFCS STRQVTSIRK RRKTTNGDNL IWALTILGFE DYIEPLKGYL  60
IRYREVIAVP PH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572314.15e-16PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
RefseqXP_016572315.15e-16PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X2
TrEMBLA0A2G2ZMS71e-46A0A2G2ZMS7_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000824658e-19(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-16nuclear factor Y, subunit B3