PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g06740
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 159aa    MW: 18110.5 Da    PI: 9.4902
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g06740genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.82.2e-2647128286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W ++e+++Li +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k+++ ++    s +++y++++e
  CA04g06740  47 WVQEETRVLIGLRREIDSLFNTSKSNKHLWDQISMKMREKGFDRSPTMCTDKWRNLLKEFKKAKQNQDRN---GSAKMSYYKEIE 128
                 *****************************************************************99984...566899***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.5639103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.1E-539108IPR009057Homeodomain-like
SMARTSM007170.002443105IPR001005SANT/Myb domain
SuperFamilySSF466894.27E-544108IPR009057Homeodomain-like
CDDcd122033.41E-2745110No hitNo description
PfamPF138375.8E-2146130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MIVDVVTGNT QLPPGHQIGD TTSSGGEENC ANPCSDLKTP KKRAETWVQE ETRVLIGLRR  60
EIDSLFNTSK SNKHLWDQIS MKMREKGFDR SPTMCTDKWR NLLKEFKKAK QNQDRNGSAK  120
MSYYKEIEEI LRERINSGGG YKSPPAPKVD SFMHFAEKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4641126186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00380DAPTransfer from AT3G25990Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-147HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569813.11e-114PREDICTED: trihelix transcription factor GT-4-like isoform X1
RefseqXP_016569815.11e-115PREDICTED: trihelix transcription factor GT-1-like isoform X2
SwissprotQ9LU927e-61TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLA0A1U8GFB91e-113A0A1U8GFB9_CAPAN; trihelix transcription factor GT-1-like isoform X2
TrEMBLA0A2G2WYF41e-113A0A2G2WYF4_CAPBA; Uncharacterized protein
TrEMBLA0A2G3CMH91e-113A0A2G3CMH9_CAPCH; Trihelix transcription factor GT-1
STRINGSolyc12g077540.1.11e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.13e-63Trihelix family protein