PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g06880

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 91aa MW: 9779.43 Da PI: 4.0917

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g06880	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	76	1.1e-23	5	57	102	154
DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++P++v+s+avf++vr+ss+++ e+++aYq++v+i+Gh+fkGiLydqG ++ CA04g06880 5 ANNFPSKVNSTAVFQRVRMSSIEETEDQIAYQAVVDINGHIFKGILYDQGDDH 57 578***********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-20	6	56	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	4.0E-25	8	54	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
GLEVANNFPS KVNSTAVFQR VRMSSIEETE DQIAYQAVVD INGHIFKGIL YDQGDDHEYN 60 YMNNVGGGDS SSGGDPMPQP HNLIGVAXCE *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	5e-82	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	5e-82	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
GenBank	KC331911	5e-82	KC331911.1 Solanum lycopersicum expression of terpenoids 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016571710.1	2e-55	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	2e-23	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A2G2ZMH9	8e-58	A0A2G2ZMH9_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400058059	2e-39	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17600	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-19	SHI-related sequence 5

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]