PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g09500
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 201aa    MW: 22640.8 Da    PI: 9.998
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g09500genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.7e-125297247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++WT++E+  +++  + +G+g+W++Ia+ +   Rt  q+ s+ qk+
       CA04g09500 52 NPWTEDEQITFLKRLEFHGKGNWAKIAKDFLPSRTSTQIASHAQKH 97
                     69***************************999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.60346102IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-114798IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-1149100IPR006447Myb domain, plants
SuperFamilySSF466891.22E-1249102IPR009057Homeodomain-like
SMARTSM007179.5E-1150100IPR001005SANT/Myb domain
PfamPF002493.4E-105297IPR001005SANT/Myb domain
CDDcd001671.92E-105398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRRNCTLCG GNGHNQRTCI EKGKSIKLFG VEITTSTVAA MSKIGRKIKK GNPWTEDEQI  60
TFLKRLEFHG KGNWAKIAKD FLPSRTSTQI ASHAQKHFMR LDANSNERKY RKKSSVFDLH  120
LEKTEDREHA IVPVETHHVP SFLSNYNMMK VPTVPEVMPV TWVYMYPYHQ YASTSASATT  180
FDNSVSGISS SSKDNLELTL *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571003.11e-151PREDICTED: transcription factor MYB1R1-like
TrEMBLA0A1U8GQH71e-150A0A1U8GQH7_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZNL71e-150A0A2G2ZNL7_CAPAN; transcription factor MYB1R1-like
STRINGPGSC0003DMT4000849453e-87(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-26MYB_related family protein