PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g11250

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 517aa MW: 57630.3 Da PI: 6.6038

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g11250	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.6e-07	264	285	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H CA04g11250 264 FCTICGKGFKRDANLRMHMRGH 285 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.32E-5	261	288	No hit	No description
PROSITE profile	PS50157	12.03	263	290	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	263	285	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.3E-6	264	314	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	265	285	IPR007087	Zinc finger, C2H2
SMART	SM00355	62	312	345	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	25	350	372	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MDPDDSLTED PWIKSSSSGN ELLKIMPSDN HSFTNFNLHA QKWEGSSYLD QQIRIEQQFS 60 GFTKPKHTSE MDQQGNHRNE NHDSTRIRDW DPRTLLNNLS FLEQKIHQLQ ELVHLIVGRR 120 GQDGVQGNDL IVQQQQLITA DLTSIIVQLI STAGSLLPTM KHTLSSASPA ANQLGQVGGV 180 TIPSTIGTSA SAGGLTCNDG VAKVEDQSNH VDQLRDCGIE QNHPADEHEL KDEDEAEEEE 240 NLPPGSYEIL QLEKEEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK TPAALAKPHK 300 EPSSEPTLIK RYSCPYVGCK RNKEHKKFQP LKTILCVKNH YKRTHCEKAY TCSRCNIKKF 360 SVIADLKTHE KHCGKDKWLC SCGTTFSRKD KLFGHISLFQ GHTPAVSPDE TKGSAGMSDR 420 GQTSEVTMKA RQENFKVNAS HGNEFQNPGV VKEGAYGSPS SYFSPLNFDT SNLNGFQEFP 480 RPPFDESDSS LSFLLSGSCE YPPHKAAKYM SSTEME*

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MDPDDSLTED PWIKSSSSGN ELLKIMPSDN HSFTNFNLHA QKWEGSSYLD QQIRIEQQFS  60
GFTKPKHTSE MDQQGNHRNE NHDSTRIRDW DPRTLLNNLS FLEQKIHQLQ ELVHLIVGRR  120
GQDGVQGNDL IVQQQQLITA DLTSIIVQLI STAGSLLPTM KHTLSSASPA ANQLGQVGGV  180
TIPSTIGTSA SAGGLTCNDG VAKVEDQSNH VDQLRDCGIE QNHPADEHEL KDEDEAEEEE  240
NLPPGSYEIL QLEKEEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK TPAALAKPHK  300
EPSSEPTLIK RYSCPYVGCK RNKEHKKFQP LKTILCVKNH YKRTHCEKAY TCSRCNIKKF  360
SVIADLKTHE KHCGKDKWLC SCGTTFSRKD KLFGHISLFQ GHTPAVSPDE TKGSAGMSDR  420
GQTSEVTMKA RQENFKVNAS HGNEFQNPGV VKEGAYGSPS SYFSPLNFDT SNLNGFQEFP  480
RPPFDESDSS LSFLLSGSCE YPPHKAAKYM SSTEME*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	0.0	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016569747.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1
Refseq	XP_016569748.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1
Swissprot	Q9C8N5	0.0	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A1U8GEJ9	0.0	A0A1U8GEJ9_CAPAN; protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform X1
STRING	PGSC0003DMT400023881	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4754	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-171	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]