PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g11660

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 66aa MW: 7385.88 Da PI: 10.8134

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g11660	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.9	2e-26	13	62	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye + CA04g11660 13 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 62 79*********************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.787	5	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-26	5	63	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-35	5	64	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.56E-34	6	65	No hit	No description
PRINTS	PR00404	5.5E-28	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-23	14	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-28	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-28	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
LKKEMARGKV QMKRIENPVH RQVTFCKRRA GLLKKAKELS VLCDAEIGLF IFSAHGKLYE 60 LATKG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-17	5	63	1	59	MEF2C
5f28_B	4e-17	5	63	1	59	MEF2C
5f28_C	4e-17	5	63	1	59	MEF2C
5f28_D	4e-17	5	63	1	59	MEF2C
6byy_A	5e-17	5	63	1	59	MEF2 CHIMERA
6byy_B	5e-17	5	63	1	59	MEF2 CHIMERA
6byy_C	5e-17	5	63	1	59	MEF2 CHIMERA
6byy_D	5e-17	5	63	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006339341.1	1e-37	PREDICTED: agamous-like MADS-box protein AGL12 isoform X1
Refseq	XP_016569789.1	1e-37	PREDICTED: agamous-like MADS-box protein AGL12 isoform X2
Swissprot	A2YQK9	4e-33	MAD26_ORYSI; MADS-box transcription factor 26
Swissprot	Q0J8G8	4e-33	MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBL	A0A2G2ZNS8	3e-39	A0A2G2ZNS8_CAPAN; MADS-box transcription factor 33 (Fragment)
STRING	PGSC0003DMT400048352	1e-37	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	6e-34	AGAMOUS-like 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Lee S, et al. Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiol., 2008. 147(1): p. 156-68 [PMID:18354041] Khong GN, et al. OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant Physiol., 2015. 169(4): p. 2935-49 [PMID:26424158]