PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g11710
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 276aa    MW: 30772.1 Da    PI: 6.8442
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g11710genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.1e-3281137259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vk se+prsYY+Ct+ +Cpv+kkvers  d++v+eitY+g+Hnhe
  CA04g11710  81 SDGYNWRKYGQKMVKASECPRSYYKCTHVKCPVRKKVERSV-DGHVTEITYKGHHNHE 137
                 7****************************************.***************7 PP
2WRKY33.67.7e-11254275122
                 ---SS-EEEEEEE--TT-SS-E CS
        WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                 ldDg++WrKYGqK+vkg+++pr
  CA04g11710 254 LDDGFKWRKYGQKVVKGNHHPR 275
                 59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.6475139IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-2875139IPR003657WRKY domain
SuperFamilySSF1182903.53E-2578139IPR003657WRKY domain
SMARTSM007741.7E-3480138IPR003657WRKY domain
PfamPF031067.4E-2482137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-12240275IPR003657WRKY domain
SuperFamilySSF1182903.27E-9246275IPR003657WRKY domain
PROSITE profilePS5081114.286249275IPR003657WRKY domain
PfamPF031061.3E-6255275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
SPFGMSHQQA LAHVTAQAAL SQSYLQGTSA QVLGTSDLDE SSLQPQLDTM PSDQQIKKFE  60
LPQISQSEEK PYLNSVDKPA SDGYNWRKYG QKMVKASECP RSYYKCTHVK CPVRKKVERS  120
VDGHVTEITY KGHHNHELPQ PNKRRRDSGA QDGSDCSKAN PEIETHTEIE TSGLNGAHLA  180
HSEQVSTERA SEPPVLKDYD EIVDTATATG KEQDDESNVK RMKTTVETPI LFSSHKAESE  240
SKIVVQTRSE VDILDDGFKW RKYGQKVVKG NHHPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-16821391977Probable WRKY transcription factor 4
2lex_A1e-16821391977Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111260.0AB711126.1 Solanum tuberosum StWRKY14 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569909.10.0PREDICTED: probable WRKY transcription factor 4
TrEMBLA0A1U8GP760.0A0A1U8GP76_CAPAN; Putative WRKY transcription factor 58
TrEMBLA0A2G2ZNP00.0A0A2G2ZNP0_CAPAN; probable WRKY transcription factor 4
STRINGPGSC0003DMT4000142201e-169(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-67WRKY DNA-binding protein 3