PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g13060
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23022 Da    PI: 6.534
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g13060genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.94.2e-212877149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i n+  r+vtf kRr g++KKA+EL++LC++e+a+i+ s ++++l+++
  CA04g13060 28 KPIANQNSRHVTFFKRRSGLFKKASELCILCGVEIAIIVQSlKRQRLFTF 77
                689*************************************9567889888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.5492068IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-232080IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-242193IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-122242IPR002100Transcription factor, MADS-box
PfamPF003195.0E-213077IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-124257IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-125778IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNMNNTDAVN STAMNVKKTQ GRRKIAMKPI ANQNSRHVTF FKRRSGLFKK ASELCILCGV  60
EIAIIVQSLK RQRLFTFGHP SADAIIDRYL SGKSASDQQF SFVQQNNEYF SQISRELDEE  120
EIIDESKRVN GNNNGFWWNE SIDDMGIEDL DKFVDALEEL KKRVNMRVDE LNMIKGSSSL  180
PSTSTMNQAI DYCASVVPFD FN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571618.11e-149PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8GS821e-148A0A1U8GS82_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZPF21e-148A0A2G2ZPF2_CAPAN; agamous-like MADS-box protein AGL62
STRINGPGSC0003DMT4000637941e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-35AGAMOUS-like 62