PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g13620

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

FAR1

Protein Properties

Length: 162aa MW: 18971.9 Da PI: 9.9043

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g13620	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.8	1.9e-23	25	111	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA+++ Fsv++ +++s+++++i+ ++f Csk+ +r++++ + +++ + etr gCka l ++k++++kw+v +l +HnHela CA04g13620 25 KFYLDYAHRTDFSVCRGLMTRSRKDKSIIGQEFLCSKKEFRSKKDLE---RNKLQDETRDGCKALLYISKKEEDKWVVCRLIAKHNHELA 111 6***************************************99888...889999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-21	25	111	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MYETRQIVFD TYIGKEFQSL DDSFKFYLDY AHRTDFSVCR GLMTRSRKDK SIIGQEFLCS 60 KKEFRSKKDL ERNKLQDETR DGCKALLYIS KKEEDKWVVC RLIAKHNHEL ASPNSQKFLR 120 SKRKKCEAQK NLIDLLDNSE IRPGKIASVL ITQVRGVDRL I*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-133	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015167012.1	1e-82	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G2ZPQ9	1e-114	A0A2G2ZPQ9_CAPAN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-23	FAR1-related sequence 5