PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g14920
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 319aa    MW: 35340.5 Da    PI: 9.0106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g14920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-20182231255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+  l+g
  CA04g14920 182 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 231
                 59******9.**********965...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.82E-32181238No hitNo description
SuperFamilySSF541711.11E-22182240IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-31182240IPR001471AP2/ERF domain
PROSITE profilePS5103222.3182239IPR001471AP2/ERF domain
SMARTSM003809.6E-35182245IPR001471AP2/ERF domain
PRINTSPR003672.8E-11183194IPR001471AP2/ERF domain
PfamPF008475.5E-14183231IPR001471AP2/ERF domain
PRINTSPR003672.8E-11205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAAAMDFWNS TVPLDLQLSS DPVTSGGELM EALEPFMKSV SPPSTSPVNF PPIFSSPSSD  60
LQSFPSFPPP PPNPISYPYT SSFYPTVQPS DDCSTSTEMN SQIFSTGFSS YGMDQQSSSI  120
GLNQLTPTQI EQIQAQINFQ IQQQQQQQMM SYHHHASSTM NFLAPKPVHM KQSGSPPKPT  180
KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYMLR GDFARLNFSH  240
LRHNFGEYNP LHSSVDAKLK DICQSLAQGK SIDSKKKKTK GSASASAXXX XXXXXXXXXX  300
XXXXXXXXGL GSYSCRGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21181247470ATERF1
3gcc_A2e-21181247470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569316.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E41e-66RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2G2ZQC40.0A0A2G2ZQC4_CAPAN; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000245081e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.19e-48ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]