PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g15240

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GATA

Protein Properties

Length: 254aa MW: 28258.9 Da PI: 8.3686

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g15240	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	52.6	6e-17	189	226	1	36
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cgt++ Tp++Rrgpdg +tLCnaCGl ++ kg++ CA04g15240 189 CTHCGTSSnnTPMMRRGPDGRRTLCNACGLTWANKGVM 226 *****99************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	12.665	63	98	IPR010399	Tify domain
SMART	SM00979	4.3E-6	63	98	IPR010399	Tify domain
Pfam	PF06200	3.2E-8	69	97	IPR010399	Tify domain
PROSITE profile	PS51017	11.499	130	172	IPR010402	CCT domain
Pfam	PF06203	2.7E-11	130	172	IPR010402	CCT domain
SMART	SM00401	1.6E-11	183	236	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.98E-12	185	232	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.0E-14	188	228	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	9.473	189	229	IPR000679	Zinc finger, GATA-type
CDD	cd00202	4.86E-13	189	227	No hit	No description
Pfam	PF00320	8.9E-15	189	226	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	189	216	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MNCQTQGMNV DSHFSGASED VPGGGDEVIG NFPAGIDGGV GGVKVMMPNY TVYSASDVTL 60 LNGEANFDQL TLSFRGRIYV FDGVPTQKVQ LVFQLLGGYE YSPGTQALGL SSASQKDYVD 120 NPVHCADPKR LESLLRFYEK RKKRCYEKKI RYGIRQEVAY RMERKNGLFA RKGSTKPKEE 180 NIPPEETWCT HCGTSSNNTP MMRRGPDGRR TLCNACGLTW ANKGVMRTLY RASYDNTELT 240 ELEFQLTNAR QCI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	2e-49	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016571510.1	1e-178	PREDICTED: GATA transcription factor 25-like
Swissprot	Q9LRH6	2e-50	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A1U8GK30	1e-176	A0A1U8GK30_CAPAN; GATA transcription factor 25-like
STRING	Solyc04g076530.2.1	1e-132	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14030	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	2e-42	ZIM-like 1

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]