PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g16130
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 210aa    MW: 23100.7 Da    PI: 10.6154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g16130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.3e-104389354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++h  +Er+RR+riN  +++L++l P +     +K +K  +L++Av  +k+L
  CA04g16130 43 VTHAVAERKRRERINGHLHTLKKLFPYL-----PKKDKPRVLTEAVTQLKEL 89
                68*************************8.....6999999**9999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-123196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.1674089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-74389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-74394No hitNo description
Gene3DG3DSA:4.10.280.109.4E-104495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-64695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.604124203IPR002912ACT domain
SuperFamilySSF550217.33E-6126192No hitNo description
Gene3DG3DSA:3.30.70.2602.7E-7126191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MLSSLQGCNG FLQHQVLVDH QRKNGDGKSS SNTKKNKSKD SAVTHAVAER KRRERINGHL  60
HTLKKLFPYL PKKDKPRVLT EAVTQLKELR KNIAQQLELS SLFIPSENDV VIVNYCDNEE  120
RTVKTTVCCE DRPALNRDIS SAIQSVQGRV VKAEMATVGG RTKAEMVVVL AKANGGEKDV  180
AQLKRALKAV VENRALGLGS SMILGRRFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853ERKRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4686381e-136CU468638.8 S.lycopersicum DNA sequence from clone LE_HBa-272I8 on chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571512.11e-153PREDICTED: putative transcription factor bHLH107
TrEMBLA0A1U8GJQ01e-151A0A1U8GJQ0_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZQT41e-151A0A2G2ZQT4_CAPAN; putative transcription factor bHLH107
STRINGPGSC0003DMT4000241851e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137131315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.17e-29bHLH family protein