PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g16610
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TALE
Protein Properties Length: 368aa    MW: 41823.8 Da    PI: 6.5111
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g16610genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-092943282155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++e+  LA+++gL+++q+ +WF N+R ++
  CA04g16610 294 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 328
                 569*****************************885 PP
2ELK37.93.8e-13248269122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK++LlrKYsgyL+sLkqE+s
  CA04g16610 248 ELKNHLLRKYSGYLSSLKQELS 269
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-5103148IPR005540KNOX1
PfamPF037905.3E-9104127IPR005540KNOX1
SMARTSM012566.2E-26155206IPR005541KNOX2
PfamPF037911.1E-23159204IPR005541KNOX2
SMARTSM011883.5E-7248269IPR005539ELK domain
PROSITE profilePS5121311.296248268IPR005539ELK domain
PfamPF037892.6E-10248269IPR005539ELK domain
PROSITE profilePS5007112.746268331IPR001356Homeobox domain
SuperFamilySSF466894.71E-19269343IPR009057Homeodomain-like
SMARTSM003898.9E-13270335IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-27273334IPR009057Homeodomain-like
PfamPF059201.8E-16288327IPR008422Homeobox KN domain
CDDcd000863.70E-11294332No hitNo description
PROSITE patternPS000270306329IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MENNYSNNQV GQNSSERGPF FYGTSHQVVG AAPNYGSGGR NSGGGSGGDC YDPMIVKTEG  60
GSTSHHHHHT FHYPSIIRHH NQTVQNHQES TETSASVGGE VLEALKAKII AHPQCSNLFD  120
AYMDCQKLSY SIVCALYKLL NVYLKFEVRQ RASLTDRDVS KDPELDQFME AYYDMLVKYR  180
EELTRPLQEA MEFMQKIEAQ LNMLGNAPVR IFNSEDKCEG VGSSEEDQDN SGGETELPEI  240
DPRAEDRELK NHLLRKYSGY LSSLKQELSK KKKKGKLPKD ARQKLLTWWD LHYKWPYPSE  300
SEKVALAEST GLDQKQINNW FINQRKRHWK PSEDMQFMVM DGLHPQSAAA LYMEGHYMGE  360
APFRLGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13744GGRNSGGG
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3351250.0KP335125.1 Solanum tuberosum knox variant X1 (POTH20) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568950.10.0PREDICTED: homeotic protein knotted-1
SwissprotQ413300.0KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A2G2ZR790.0A0A2G2ZR79_CAPAN; Homeobox protein knotted-1-like 1
STRINGPGSC0003DMT4000127120.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-123KNOTTED-like from Arabidopsis thaliana