PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g17530

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 597aa MW: 64123 Da PI: 8.1245

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g17530	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.7e-24	203	247	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e CA04g17530 203 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 247 79****************************************985 PP
2	QLQ	61.8	1.9e-21	135	171	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k CA04g17530 135 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIRK 171 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.4E-12	135	171	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.516	136	171	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.1E-16	136	170	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	203	247	IPR014977	WRC domain
Pfam	PF08879	7.1E-21	204	246	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MDFGVVVGGL DSGGGVICSD NTSNMFAETK QQKLLYGSVG FNKHERSSVV TSEDEWNNKD 60 TKLAKTTHDF SVSKPTMLFQ QQQMLSFAAP NNTQNHLTVS YYQHPSSGFA RNTPGCGSGA 120 LNGGNMHGLI AGVKGPFTPS QWMELEHQAL IYKYITANVP IPPYLLNPIR KALESAGFPT 180 FTGLRSNALG WGAFHLGFSN SNDPEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR 240 SRKPVEGQTG NSASANTGAT TTTTTTSAKL MNMSSAASAA LASGGGAAAS SNSLNLSHHS 300 QLCNLQPAVT NPSTTSPYLE RSYTAKENFG ERYSDMKGST IVSPSVKEPQ YKEQNLYGVT 360 SRAEFGLVCA DSLINPLNKK SSLVNCRGFG NSDNISDQES KSQHHPLRQF MDDWPKNQSD 420 QSNVSWPDID LQSDPTQLSI SIPVVTSDFM SSTSSPANDK LTASSHRSRE HEATQMGLGI 480 GTIISEHNQR QGSWIPISWE SSMGGPLGEV LHSTNSSSGD CKNNSALNLM TEGWDRSPRM 540 GSSPTGVLQK SSFGSLSNSS AGSSPRAENS KTTNEGSSLC NGLLGTTIMN PTLPAM*

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MDFGVVVGGL DSGGGVICSD NTSNMFAETK QQKLLYGSVG FNKHERSSVV TSEDEWNNKD  60
TKLAKTTHDF SVSKPTMLFQ QQQMLSFAAP NNTQNHLTVS YYQHPSSGFA RNTPGCGSGA  120
LNGGNMHGLI AGVKGPFTPS QWMELEHQAL IYKYITANVP IPPYLLNPIR KALESAGFPT  180
FTGLRSNALG WGAFHLGFSN SNDPEPGRCR RTDGKKWRCS RDAVADQKYC ERHMNRGRHR  240
SRKPVEGQTG NSASANTGAT TTTTTTSAKL MNMSSAASAA LASGGGAAAS SNSLNLSHHS  300
QLCNLQPAVT NPSTTSPYLE RSYTAKENFG ERYSDMKGST IVSPSVKEPQ YKEQNLYGVT  360
SRAEFGLVCA DSLINPLNKK SSLVNCRGFG NSDNISDQES KSQHHPLRQF MDDWPKNQSD  420
QSNVSWPDID LQSDPTQLSI SIPVVTSDFM SSTSSPANDK LTASSHRSRE HEATQMGLGI  480
GTIISEHNQR QGSWIPISWE SSMGGPLGEV LHSTNSSSGD CKNNSALNLM TEGWDRSPRM  540
GSSPTGVLQK SSFGSLSNSS AGSSPRAENS KTTNEGSSLC NGLLGTTIMN PTLPAM*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ997852	0.0	FJ997852.1 Capsicum annuum UPA17 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311867.1	0.0	growth-regulating factor 1-like
TrEMBL	A0A2G2ZR93	0.0	A0A2G2ZR93_CAPAN; Growth-regulating factor 8
STRING	Solyc04g077510.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1688	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	4e-57	growth-regulating factor 1

Publications ? help Back to Top
Kay S,Hahn S,Marois E,Wieduwild R,Bonas U Detailed analysis of the DNA recognition motifs of the Xanthomonas type III effectors AvrBs3 and AvrBs3Deltarep16. Plant J., 2009. 59(6): p. 859-71 [PMID:19473322]