PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g18300
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 315aa    MW: 35083.4 Da    PI: 10.1851
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g18300genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31242299359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  CA04g18300 242 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLIVTYEGEHNHS 299
                 99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-17190238IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-33228299IPR003657WRKY domain
PROSITE profilePS5081130.699235301IPR003657WRKY domain
SuperFamilySSF1182904.58E-27237299IPR003657WRKY domain
SMARTSM007746.6E-38240300IPR003657WRKY domain
PfamPF031062.9E-27242298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSTGYRPNNF SSKMEENSVQ EAAAAGLQSV EKLIRLLSQS QQQQQQNHQQ QTNFQNSSSN  60
DYQVVADVAV NKFKKFISLL DKNRTGHARF RRAKPQQNKQ QMEESEKQQS SATKIYCPTP  120
IQRLPPLPHN HHQQILIKNG SIERKEAASS TTINFASPSP ATSFMSSLTG ETESLQNSLS  180
SGFQITNLSQ RKCSSMDDIA LKCNSAGGSS GRCHCPKKRK SRVKRVVRVP AISMKMADIP  240
PDDYSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER ALDDPAMLIV TYEGEHNHSH  300
SITETPATHV LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21228298271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569141e-156EU056914.1 Solanum tuberosum WRKY transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568783.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-94WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2G2Y0G50.0A0A2G2Y0G5_CAPAN; Uncharacterized protein
STRINGSolyc04g078550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-77WRKY DNA-binding protein 7