PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA04g18460

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 119aa MW: 14075.1 Da PI: 9.2753

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA04g18460	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2e-10	48	74	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 hn E+rRR+riN+++ L++l+P++ CA04g18460 48 VHNLSEKRRRSRINEKLKALQTLIPNS 74 6************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.51E-10	41	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-10	41	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.715	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.42E-7	47	76	No hit	No description
Pfam	PF00010	4.8E-8	48	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MNSENRREFL EDDKVDNFGF SSEECDGLDM PSNQTHPRSS KRSRSAEVHN LSEKRRRSRI 60 NEKLKALQTL IPNSNKVFFN TPVFEHSIVY WFFLAIIFEL YLFHRLTRHL CLMKPLNI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	3e-65	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016570768.1	2e-43	PREDICTED: probable serine/threonine-protein kinase At1g01540
TrEMBL	A0A2G2VBW3	3e-45	A0A2G2VBW3_CAPBA; Transcription factor PIF3
TrEMBL	A0A2G2Y0F1	2e-46	A0A2G2Y0F1_CAPAN; Transcription factor ALC
STRING	Solyc04g078690.2.1	2e-42	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7543	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-15	phytochrome interacting factor 3