PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g21160
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26015.5 Da    PI: 10.0559
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g21160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.67.9e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ien++nrqvt+skRrng++KKA+EL vLCda+v+++++sstgkl+e++s
  CA04g21160  9 KKIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIVMISSTGKLHEFIS 59
                68***********************************************86 PP
2K-box88.61.2e-2971169199
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 yqk+ g++l+++++e   ++ +kLk+ ++nL++e+R+++Ge+L++L++++L++L +++++slk iR++K++++ +qie+ +kk ++++e++++L  +++
  CA04g21160  71 YQKTVGVDLWNSHYEVAMKKXRKLKDVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETYKKKVRNVEEIHRNLLLEFD 169
                 899999***************************************************************************************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.609161IPR002100Transcription factor, MADS-box
CDDcd002651.65E-38280No hitNo description
PRINTSPR004041.4E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-34391IPR002100Transcription factor, MADS-box
PfamPF003196.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.56684174IPR002487Transcription factor, K-box
PfamPF014864.4E-1884167IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIVMISS TGKLHEFISP  60
SITTKQLFDL YQKTVGVDLW NSHYEVAMKK XRKLKDVNRN LRKEIRQRMG ESLNDLNYEQ  120
LEELMENVDN SLKLIRERKY KVIGNQIETY KKKVRNVEEI HRNLLLEFDA RQEDPYGGLV  180
EQEGDYNSVL GFPNGGGARI LALRLQPNHH HLHSGGGSDI TTFGLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-14162162MEF2C
5f28_B3e-14162162MEF2C
5f28_C3e-14162162MEF2C
5f28_D3e-14162162MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1046350.0HM104635.1 Capsicum annuum PAP3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311863.11e-161floral homeotic protein PMADS 1
SwissprotQ074721e-136MADS1_PETHY; Floral homeotic protein PMADS 1
TrEMBLA0A1U8GIB21e-160A0A1U8GIB2_CAPAN; floral homeotic protein PMADS 1
TrEMBLD7RNT61e-160D7RNT6_CAPAN; PAP3
STRINGXP_009794650.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-93MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Li X,Liu C,Da F,Ma N,Shen H
    Expression pattern of Class B gene PAP3 in flower development of pepper.
    Int J Mol Sci, 2013. 14(12): p. 24643-55
    [PMID:24351839]
  3. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]