PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g21210
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SRS
Protein Properties Length: 379aa    MW: 40706.4 Da    PI: 8.738
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g21210genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022251.5e-691483013153
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsalsstkls 92 
                 +g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql+++++++++ +         +++ +k     + +++ ++s  +l+
  CA04g21210 148 TGGMNCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQHQQNLQqtqllslraDSNIPK-----RPRENPSSSLVRLP 241
                 6899****************************************************998877655455554322222223.....34566777888999 PP

      DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                 +++s  el  + +P+evss+avfrcv+vs+vdd+++++aY+tav+igGh+fkGiLydqG+e
  CA04g21210 242 NNSSGLELGGH-FPSEVSSQAVFRCVKVSAVDDADDQYAYHTAVNIGGHLFKGILYDQGPE 301
                 99988888776.***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.7E-68150301IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.6E-27152194IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.7E-27252300IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSGFFTLGGG GGGGNKGSHH QQQQQQEQDQ LGNNSFLLFK DEEIYNKGFE LWQQYYQLHQ  60
QQRTHPSPHH HHHLQQQHQD VDFSVGVGPS SNRRIISTGS SSSSGGNNNI IAGGDHNNYS  120
TLNNSSSFRS SSGFRVIRAS STSGGGATGG MNCQDCGNQA KKDCSHMRCR TCCKSRGFQC  180
QTHVKSTWVP AAKRRERQQQ LTSLQQHQQN LQQTQLLSLR ADSNIPKRPR ENPSSSLVRL  240
PNNSSGLELG GHFPSEVSSQ AVFRCVKVSA VDDADDQYAY HTAVNIGGHL FKGILYDQGP  300
EGRYSGGGGG GGGESSSGSG AAQQALNFIT GATTSTTAAA TTSHHHHQPP VTVFDSSVYP  360
APITAFLAGT QFFPPPRP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-116HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571423.10.0PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X1
TrEMBLA0A1U8GRP00.0A0A1U8GRP0_CAPAN; Protein SHI RELATED SEQUENCE 2
TrEMBLA0A2G2ZSB50.0A0A2G2ZSB5_CAPAN; protein SHI RELATED SEQUENCE 1-like isoform X1
STRINGSolyc04g080970.2.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-62Lateral root primordium (LRP) protein-related