PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g01300

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 69aa MW: 7637.03 Da PI: 10.2732

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g01300	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.9	1.4e-14	17	65	3	51
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +e+ r f kR++++l ELS+L++a v+v+++s+tgk y yss CA05g01300 17 VESMEARIACFFKRKTTLLRNVDELSILTGAHVCVLLVSPTGKPYSYSS 65 6777889999*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.549	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.7E-16	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.14E-17	8	67	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.47E-17	8	66	No hit	No description
PRINTS	PR00404	6.6E-10	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.1E-17	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-10	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-10	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MEKRTSKGKQ KIEMKLVESM EARIACFFKR KTTLLRNVDE LSILTGAHVC VLLVSPTGKP 60 YSYSSSSI*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240985.1	2e-22	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A2G3AI83	9e-22	A0A2G3AI83_CAPAN; Uncharacterized protein
STRING	XP_009797678.1	6e-21	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14908	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	1e-12	AGAMOUS-like 29