PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g03100
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 709aa    MW: 79278.3 Da    PI: 9.5721
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g03100genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94e-07591640147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
       CA05g03100 591 RRPFSVAEVEALVEAVEQLGTGRWRDVKIRAFeyaDHRTYVDVKDKWKTL 640
                      6789999*******************9988889999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.39E-6391466IPR029071Ubiquitin-related domain
PROSITE profilePS500539.482395467IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.906.5E-4398467No hitNo description
PROSITE profilePS5129415.907586645IPR017930Myb domain
SMARTSM007172.2E-7590643IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-9591641IPR009057Homeodomain-like
SuperFamilySSF466893.89E-15592673IPR009057Homeodomain-like
CDDcd116601.68E-14592642No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MSSKKRVRHG FNDYQFPVIP KAPRSVRRRR SHKNVDNDQI CAFELLAAVA GELLQESESS  60
ACSNAAVGKD VLSDCREVIK RDQLQEDKSM KSEFFDQGSC VESAYILEPA VQEQNLKYSL  120
DKPSRTENNI FHKNSCTFLN SDFSRKDCKE VNIDGKSHTE VEDGSSSLED VCGKRIETGT  180
KKQLDDGSKT EDLTVANSCS VKGLIEKHVN NNSAINSDSS VQFPSYRAVP RPSFGKQGNN  240
VKLGIRDDDE NSFRSYRHST NIMAFRQTSH TGYRRMRKML TSRHWKVLPQ LKDWERSCSH  300
YGIKSFHRNR KRVRALERCR LEIPSKRRKL CHNSSIVAYD QQANSKSISK SREKGIKRDI  360
ISPRVLLSNI LSFLTGAKVG ASASDRNHQK KDPNVKFSIK SFKVPELLIE VPENETIGSL  420
KRTVVEAVKT ILGSGLRVGM VVQGKKVRDD NKTLQQAGIS QNGNLNLDTL GFTLEPSSYP  480
VSPSLHSKDF SALSPRGVDH ELTRRPPSPI MELELPSASS DPPKIMLDEH DEDYHELALS  540
PTNLIVDPPS GVDNPDSGAL VIVCPPNGEA HPVVPMSSKN GRSELPQRRT RRPFSVAEVE  600
ALVEAVEQLG TGRWRDVKIR AFEYADHRTY VDVKDKWKTL VHTASIAPQQ RRGEPVPQEL  660
LDRVLIAHGY WSKQHGKHHA ENAGALENNS NNNNNSTSMS SKMAQSAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-565756921118Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309328RKRVRALERCRLEIPSKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572125.10.0PREDICTED: telomere repeat-binding protein 3-like
TrEMBLA0A2G2ZFT80.0A0A2G2ZFT8_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000162600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-101TRF-like 2