PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g04100
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YB
Protein Properties Length: 186aa    MW: 19936.5 Da    PI: 7.9386
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g04100genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.32.7e-5429122194
       NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                 vreqdr+lPian++rimkk lP+naki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddl+wal+tlGfedy+eplk yl +yre+ 
  CA05g04100  29 VREQDRYLPIANIGRIMKKGLPTNAKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLIWALTTLGFEDYIEPLKGYLIRYREVI 122
                 69******************************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-5123132IPR009072Histone-fold
SuperFamilySSF471133.26E-3932135IPR009072Histone-fold
PfamPF008081.5E-273599IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.5E-196381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.5E-1982100No hitNo description
PRINTSPR006156.5E-19101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAEVPASPGG GGASHESGGG DEQSPQSNVR EQDRYLPIAN IGRIMKKGLP TNAKIAKDAK  60
DTVQECVSEF ISFITSEASD KCQKEKRKTI NGDDLIWALT TLGFEDYIEP LKGYLIRYRE  120
VIAGDTKGSV RAGDTSARKD IVGGHLGPSS QVRGHQILYS TCSGICNPYS INKGVIILTP  180
YFLGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4629120192Transcription factor HapC (Eurofung)
4g92_B6e-4629120192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263582e-64CU326358.5 S.lycopersicum DNA sequence from clone SL_MboI-40B16 on chromosome 4, complete sequence.
GenBankHG9755162e-64HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572314.11e-103PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
RefseqXP_016572315.11e-103PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X2
SwissprotQ8VYK41e-69NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1U8GMB91e-102A0A1U8GMB9_CAPAN; nuclear transcription factor Y subunit B-1-like isoform X2
TrEMBLA0A1U8GVY71e-102A0A1U8GVY7_CAPAN; nuclear transcription factor Y subunit B-1-like isoform X1
STRINGVIT_13s0019g03600.t014e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.33e-66nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]