PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g05360

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 222aa MW: 23694 Da PI: 10.7496

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g05360	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.3	3.1e-39	32	133	2	104
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ +++++ ++ +k++ CA05g05360 32 AVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFS-TVSVSVRNSSTGISSSLSAPLDQKSQ 129 789******************************************************************777.44444444444455444444444444 PP TCP 101 qksa 104 q+++ CA05g05360 130 QQQQ 133 4443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.613	38	92	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.4E-35	39	131	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSTSAEGNGA IIDPQRQQQQ QPSGVGTNGA LAVKKPPVKD RHSKVDGRGR RIRMPIVCAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTIPA SFSTVSVSVR NSSTGISSSL 120 SAPLDQKSQQ QQQLIPAPFI LGKRLRSDEE NLEHGNKDDV GAGAGTATAS VGPTAGFWAV 180 PARPDFGQIW SFAAXXXXXX XXXXXXXXXX XXXXXXXPPL R*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016564270.1	1e-138	PREDICTED: transcription factor TCP21-like
Swissprot	Q9FMX2	2e-68	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1U8FZJ5	1e-137	A0A1U8FZJ5_CAPAN; transcription factor TCP21-like
STRING	Solyc04g009180.1.1	1e-111	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	9e-59	TCP family protein