PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g07560
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARR-B
Protein Properties Length: 584aa    MW: 63712.1 Da    PI: 6.9902
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g07560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.82.5e-28162215155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  CA05g07560 162 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 215
                 79*******************.********************************8 PP
2Response_reg54.85.3e-1928725109
                   EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   +v++++ ++ al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i++++ g  +++ + ++ Ga d+l Kp+  eel +
    CA05g07560   2 RVTTCTRATVALNLLRERRetFDIVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDGRTNLVMRGVQHGACDYLIKPIRDEELKN 87 
                   7999***********988888*******************87754.558***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004489.2E-6189IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.977193IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.75E-20192No hitNo description
Gene3DG3DSA:3.40.50.23001.2E-292125No hitNo description
PfamPF000729.3E-16287IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521727.97E-252100IPR011006CheY-like superfamily
SuperFamilySSF466891.22E-19159219IPR009057Homeodomain-like
PROSITE profilePS5129410.655159218IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.2E-30160220IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-24162215IPR006447Myb domain, plants
PfamPF002498.1E-7164213IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MRVTTCTRAT VALNLLRERR ETFDIVLSDV HMPDMDGFKL LELVGLEMDL PVIMMSGDGR  60
TNLVMRGVQH GACDYLIKPI RDEELKNIWQ HVVRKRYNSN KEHECSGSLD DNDRYKRGSD  120
DVECASSVVE GADGVIKPQK KKREAKEDDT EVENDDPGTT KKPRVVWSVE LHQQFVSAVN  180
QLGIDKAVPK RILELMNVPG LTRENVASHL QKFRLYLKRL SGVVQQQGGI PSTFCGPMEQ  240
NSELVSLGRF DIQALAASGQ IPPETLTALH AELLGRSTSN LVLPAVEQQN LLQASLQQAK  300
CMPVDQLVAY GQPLLKCPPS ISNSKHPSQS ILSAADVHSG FGSQRAKNIC MVPSSNPTGI  360
AAPNSNMFMA MMQHQQQWQK QQQLELRHRQ SGPLESNYSI NVQPSCVVLP SQSPGNFQVG  420
DSPASMSRAN SLSKSSVVDY GVLSPQSNNS SGVIQVLDRE LRPECGSNRL SSGGSLSCSC  480
SINADNSVGL QFHNSSSAFG SSKQLPGLNP NHLGSPVPYN INSSQVLDQG HIRNPVVGKG  540
ASIPSRFAVD ECESAMCNLN TAKSYLEDAK VKQEPNMNLM ENC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22161221464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572596.10.0PREDICTED: two-component response regulator ORR21 isoform X3
SwissprotA2XE311e-133ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-133ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A2G2ZHB10.0A0A2G2ZHB1_CAPAN; Two-component response regulator
STRINGPGSC0003DMT4000759070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-104response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]