PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g10030
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 201aa    MW: 22060.5 Da    PI: 4.791
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g10030genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.61.1e-20231011786
    trihelix  17 meerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s + + ++l+
  CA05g10030  23 AENRIRRGRtgslefgsaQVEPKWASVSSYCKKHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKEETESFWLMRNDLR 101
                 55556655334444444599********************************************999999999888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-103996No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MKLERLNLTP SIVNADSDGK KVAENRIRRG RTGSLEFGSA QVEPKWASVS SYCKKHGVNR  60
GPVQCRKRWS NLAGDFKKIK EWESQIKEET ESFWLMRNDL RREKKLPGFF DREVYDILDR  120
GTGSGNGDEE EGLVLALGSS GVAEESEVLF DSGKSAAAGD DGLFSDFEPL QDEVGATSHE  180
DFPPINQLPI PAPTPISGTT *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142419e-95BT014241.1 Lycopersicon esculentum clone 133441F, mRNA sequence.
GenBankHG9755169e-95HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572699.11e-133PREDICTED: trihelix transcription factor ASR3 isoform X1
RefseqXP_016572700.11e-133PREDICTED: trihelix transcription factor ASR3 isoform X2
SwissprotQ8VZ203e-61ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2G2ZHW91e-142A0A2G2ZHW9_CAPAN; Uncharacterized protein
STRINGSolyc04g045430.2.11e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-63Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]