PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g10590

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 202aa MW: 21953.1 Da PI: 5.6966

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g10590	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.3e-43	43	142	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+ae a++++ CA05g10590 43 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAEFAKAHA 141 7***********************************************************************************************998 PP DUF260 100 e 100 e CA05g10590 142 E 142 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.313	42	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-43	43	140	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MKCSDPKTIA TISSMNSSSS SFSSTVATAT SSILSTPPVI LSPCAACKIL RRRCVEKCVL 60 APYFPPTEPL KFTIAHRVFG ASNIIKMLQE LPEEQRADAV NSMVYEANAR IRDPVYGCAG 120 AICQLQKQIS ELQAEFAKAH AEIMNLKCQN SNLLALVCME VSENSSSSSL LSSDHINDYG 180 NNTSMFLEDN SVYAAWEPLW T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	36	148	4	116	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	36	148	4	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	1e-96	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553034.1	1e-148	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-72	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1U8F9W3	1e-146	A0A1U8F9W3_CAPAN; LOB domain-containing protein 1-like
STRING	Solyc05g048740.2.1	1e-108	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-72	LOB domain-containing protein 1