PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g10920
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 1073aa    MW: 118755 Da    PI: 6.3751
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g10920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.2e-20112213199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++ yr++++r++lt+GW+  v+ ++L +gD+v+F +d++++f  +
  CA05g10920 112 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNIWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFIRDEKHQF--L 207
                 99*****************************9777766.49************************************************6554555..9 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++++
  CA05g10920 208 LGIRKA 213
                 998875 PP
2Auxin_resp118.55.4e-39238321183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+v+YnPra++seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  CA05g10920 238 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 321
                 79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-38103227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-41103241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-17111212No hitNo description
PROSITE profilePS5086311.138112214IPR003340B3 DNA binding domain
SMARTSM010194.4E-21112214IPR003340B3 DNA binding domain
PfamPF023622.9E-17112213IPR003340B3 DNA binding domain
PfamPF065072.7E-34238321IPR010525Auxin response factor
PROSITE profilePS5174527.7489601044IPR000270PB1 domain
PfamPF023091.5E-69621045IPR033389AUX/IAA domain
SuperFamilySSF542772.55E-69781038No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1073 aa     Download sequence    Send to blast
EKKTINPELW QACAGPLVNL PVAGTHVVYF PQGHSEQVAA SIKKDVEAQI PNYPNLPSKL  60
ICLLHNVTLH ADPETDEVYA QMTLQPVPSF DKEALLRSDL SMKANKPQPE FFCKTLTASD  120
TSTHGGFSVP RRAAEKIFPP LDYSLQPPAQ ELVARDLHDN IWTFRHVYRG QPKRHLLTTG  180
WSLVVSGKRL FAGDSVLFIR DEKHQFLLGI RKANRQPTNL SSSVLSSDSM HIGILAAAAH  240
AAANNSPFTV FYNPRAGPSE FVIPLAKYYK ATYSSQVSLG MRFRMMFETE ESGTRRYMGT  300
ITGISDLDPV RWKNSQWRNL QVGWDESTAG ERINRVSIWE IEPITAPFLI CSSPFFSSKR  360
PRQPGMPDGD YSDIDGMFKR TMPFLGDDFG TTDPQGLPGF SLIQWMNMQK NFSPANPMLP  420
NYLNSLPGSA LQNLAGADLS HQLGLAAPQF QQKHNLQFNT HRTNQQGQQL DQLQKLPAAT  480
LNPLDSIMQS QQQLSDVSQQ PGQNLTNQSL PTTQVHTQHP QGQNLVQSQN VLPSQQSIQN  540
QLQRNLPQSL PQQQILSQTQ QQSFMTSQTQ DHVNQQQHFS DNQAQIQLLQ KLHQQQKSLL  600
AQQSALQQPS QLGPIQDHQK QLLDVSQNFS RSPVTNQMLD ASQTMSTSLS HSQVVQQQMT  660
RINSPSNLRF SQPTQQLKLQ QQQSGNLSDL SGPVNYSVPR TTYQLPTNGS NLTITARGGQ  720
SVVTDDVVPS CSTSVSTNNC YNVVQPNMNG RITGARDETT HCSGPLEVLS ANINLQQKSD  780
VKPSVNVVSK SQNHGFVAPQ TLNTSGLQFD YLDCSSSATS ACLSQNDVQL QQTTTDPLSC  840
SSQPVIFRDS PDGGEVQGDP RNNVAFGAAN MENNQLGLPM IPDPLITKSS VGSRKDFSDN  900
LSSGGGMLSS YENPKEAQPE LLASMASEYI TFNSIDSTIN DGNFMDRGAW EPPPQLPRLR  960
TYTKVYKRGA VGRSIDIARY SGYEELKLDL ARRFGIEGQL EDRQRIGWKL VYVDHENDVL  1020
LVGDDPWEEF VSCVRCIKIL SPQEVQQMSL DGDFGGSVLQ NQDCSSSDAG DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-166134247388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651300.0HM565130.1 Solanum lycopersicum auxin response factor 19-1 (ARF19-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573131.10.0PREDICTED: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A1U8GPF50.0A0A1U8GPF5_CAPAN; Auxin response factor
TrEMBLA0A2G2ZIQ80.0A0A2G2ZIQ8_CAPAN; Auxin response factor
STRINGPGSC0003DMT4000355920.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19