PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g11310
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Trihelix
Protein Properties Length: 354aa    MW: 41255.5 Da    PI: 4.4587
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g11310genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.22.4e-14114199286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W+++e  +L+e+  e+  +l+r++l++ +W ev++k+ +  g+ +s ++C++ ++ l+k+ykk+ + ++k   + +s++p+f++++
  CA05g11310 114 WSEEESFVLLEVWGERYLDLGRRSLRAEDWGEVAEKVtEMIGVDKSEIECRNQLDVLKKKYKKEITKMEKTGGGFHSKWPFFKKMD 199
                 *************************************5568**********************99999988899999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-19112201No hitNo description
PROSITE profilePS510298.625114206IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MIVVNMNDSD DDETPYPSRP NAIYTSSLPS RRSIRNPNFY PRNTHYDEYN NEYQYNNYDD  60
DEESDENENQ EFSTGENEFV TFQGTHKKKR KLETLVLNYE FAPRLGSHSS KETWSEEESF  120
VLLEVWGERY LDLGRRSLRA EDWGEVAEKV TEMIGVDKSE IECRNQLDVL KKKYKKEITK  180
MEKTGGGFHS KWPFFKKMDM LMNLRMKGHC GLGCGLDSGE YVFMDPRMYL DRSNVLDEMR  240
DSPAGSDADN DEEEEEQGSG GWKGDDESAK LLADSIQRFG HIYEKIENSK RKQMMELEKI  300
RMDFQRELEL QKKQIVERAQ VEIAKIRDNS ENDDNEDEDC ANADNVSCEK LRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691KKKRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574195.10.0PREDICTED: uncharacterized protein LOC107871832
TrEMBLA0A1U8GST90.0A0A1U8GST9_CAPAN; uncharacterized protein LOC107871832
TrEMBLA0A2G2ZIC80.0A0A2G2ZIC8_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000705931e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120602022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.16e-73Trihelix family protein