PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g13150
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 514aa    MW: 57085.7 Da    PI: 6.5718
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g13150genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.58.9e-10233289155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++  g  rk  + g ++ +++Aa+ ++ a++k++g
  CA05g13150 233 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqARKGRQ-GGYDKEDKAARSYDLAALKYWG 289
                 57*******************88885555446666.7799999*************98 PP
2AP250.26.6e-16332383155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  CA05g13150 332 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 383
                 57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-13233299IPR016177DNA-binding domain
CDDcd000183.32E-19233299No hitNo description
PfamPF008473.0E-7233289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-11234299IPR001471AP2/ERF domain
PROSITE profilePS5103216.937234297IPR001471AP2/ERF domain
SMARTSM003802.5E-19234303IPR001471AP2/ERF domain
PRINTSPR003673.4E-6235246IPR001471AP2/ERF domain
CDDcd000188.22E-12332391No hitNo description
SuperFamilySSF541717.19E-18332392IPR016177DNA-binding domain
PfamPF008472.8E-10332383IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-18333391IPR001471AP2/ERF domain
PROSITE profilePS5103219.177333391IPR001471AP2/ERF domain
SMARTSM003807.3E-31333397IPR001471AP2/ERF domain
PRINTSPR003673.4E-6373393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MAPESNANWL SFSLSSMEML NNSSSSVHHE SSMLQSNDPS SSAADNHQYY FADNLFPHGW  60
MNPKSHQVMY SENEKQFFHQ GLFLDNNPQI IQHHQQPPPK LEDFFGGESD TSPTQDSSSL  120
THIYHHHNHG GHMATCDGGY FNNGQQDVNV TTAVAMVGGF QSFPTNSDSE VDDPQVMGTE  180
SSNELGYTAS INGGLSLGVN NTNCTNSLDT AIVTAVDSES CKKITDTFGQ RTSIYRGVTR  240
HRWTGRYEAH LWDNSCKREG QARKGRQGGY DKEDKAARSY DLAALKYWGA TATTNFPASN  300
YTKEIEEMKH MTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI GRVAGNKDLY  360
LGTFATEEEA AEAYDIAAIK FRGLNAVTNF EMNRYDVEAI MKSSLPIGGA AKRLKISLES  420
EQKPSLNDNY QQTPHNNVNN NHSINFGAIS PVSAIPCGLP GLPFDTNQPF YHHSFFPHLQ  480
YSRNDVGASD HTSGTMPLLP SPAEIFIWPH QSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-120HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573184.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-153AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G2WT580.0A0A2G2WT58_CAPBA; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G3CG180.0A0A2G3CG18_CAPCH; AP2-like ethylene-responsive transcription factor AIL6
STRINGSolyc05g051380.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-138AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]