PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g13910

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

EIL

Protein Properties

Length: 210aa MW: 23773.7 Da PI: 10.5545

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g13910	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	266.2	1.4e-81	7	207	73	277
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHH CS EIN3 73 vYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepP 171 vYgi++ekgk+v+g+sdsL++WWkekv+f++n+ +ai+++ +l+ + + l+ +ss l+elqDTtl+S+Lsalmqhc ppqrrfple+g++pP CA05g13910 7 VYGIVSEKGKLVSGSSDSLQEWWKEKVRFEQNASIAIAES-LSKLVEE--NILDP-NSSFMCLLEELQDTTLSSILSALMQHCIPPQRRFPLERGLAPP 101 8***********************************99.6677744..34433.789999********************************* PP H---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.XXXX CS EIN3 172 WWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.slrk 269 WWP G+elwwg++gl+++qg+ppy+kph lkkawkvsvL+a ikhmsp++ ++ +l+ qsk lq+km+ake+ ++++v+nqee++++ + + s++k CA05g13910 102 WWP-GNELWWGNQGLAQEQGPPPYRKPHGLKKAWKVSVLAAIIKHMSPDLGRMMRLVKQSKNLQNKMTAKETSTWAKVVNQEEALLKLTKRALKiSTSK 199 .9******************************************************************************987666664456677 PP XXXXXXXX CS EIN3 270 qspkvtls 277 +++k+ ++ CA05g13910 200 ERKKIRIN 207 77777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	9.1E-80	7	183	No hit	No description
Gene3D	G3DSA:1.10.3180.10	2.0E-62	59	188	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	4.32E-54	64	186	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
YAKVKAVYGI VSEKGKLVSG SSDSLQEWWK EKVRFEQNAS IAIAESLSKL VEENILDPNS 60 SFMCLLEELQ DTTLSSILSA LMQHCIPPQR RFPLERGLAP PWWPGNELWW GNQGLAQEQG 120 PPPYRKPHGL KKAWKVSVLA AIIKHMSPDL GRMMRLVKQS KNLQNKMTAK ETSTWAKVVN 180 QEEALLKLTK RALKISTSKE RKKIRINKN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	2e-57	66	187	6	128	Protein ETHYLENE INSENSITIVE 3
4zds_B	2e-57	66	187	6	128	Protein ETHYLENE INSENSITIVE 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-112	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553467.1	1e-139	PREDICTED: LOW QUALITY PROTEIN: putative ETHYLENE INSENSITIVE 3-like 4 protein
Swissprot	Q9FJQ5	3e-82	EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
Swissprot	Q9LX16	3e-83	EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBL	A0A2G2ZIY1	1e-148	A0A2G2ZIY1_CAPAN; Putative ETHYLENE INSENSITIVE 3-like 4 protein
STRING	Solyc00g154980.1.1	1e-121	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA304	23	178

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10120.1	1e-85	EIL family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS Seed-specific expression of seven Arabidopsis promoters. Gene, 2014. 553(1): p. 17-23 [PMID:25261846]