PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g14470

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ERF

Protein Properties

Length: 140aa MW: 15547.6 Da PI: 10.5075

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g14470	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62	1.3e-19	19	69	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+f ta+eAa a+++a+ +++g CA05g14470 19 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTFETAQEAAIAYDKAAYRIRG 69 8******.*******9987..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.62E-28	18	77	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.6E-32	18	78	IPR001471	AP2/ERF domain
SMART	SM00380	2.6E-35	19	83	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.986	19	77	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.01E-23	19	78	IPR016177	DNA-binding domain
Pfam	PF00847	4.5E-13	19	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.9E-11	20	31	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.9E-11	43	59	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0009864	Biological Process	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0051301	Biological Process	cell division
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MASPAETTKA AAEALKDKHY RGVRRRPWGK FAAEIRDPAK NGARVWLGTF ETAQEAAIAY 60 DKAAYRIRGT KAHLNFPSQI SLNEPEPVRV TAKRRVLHER DSPLENDLAK RKRENGVAEK 120 CESRSSVEQL TGGHQLLVT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-34	16	84	2	70	ATERF1
3gcc_A	1e-34	16	84	2	70	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	112	KRRVLHERDSPLENDLAKRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00548	DAP	Transfer from AT5G47220	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	4e-62	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016574729.1	2e-96	PREDICTED: ethylene-responsive transcription factor 1-like
Swissprot	Q40479	1e-53	ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBL	A0A2G2ZJ36	8e-98	A0A2G2ZJ36_CAPAN; Ethylene-responsive transcription factor 2
STRING	PGSC0003DMT400041331	2e-57	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4054	22	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47220.1	6e-42	ethylene responsive element binding factor 2

Publications ? help Back to Top
Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells. Plant Cell Physiol., 2006. 47(4): p. 554-8 [PMID:16452120]