PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g16170
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 231aa    MW: 25946.9 Da    PI: 8.9706
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g16170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.6e-33122180159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK vk+s+fprsYYrCt+++C vkk+vers +d+++v++tYeg+H+h+
  CA05g16170 122 LDDGYKWRKYGQKAVKNSPFPRSYYRCTTTSCGVKKRVERSIQDTSIVVTTYEGTHTHS 180
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33107182IPR003657WRKY domain
SuperFamilySSF1182904.58E-29114182IPR003657WRKY domain
PROSITE profilePS5081130.354117182IPR003657WRKY domain
SMARTSM007742.7E-37122181IPR003657WRKY domain
PfamPF031063.0E-26123179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFGGTHVDHQ DYDFITTTTS NSIFDLLMLP PHQPIITTST VQDSTISDQL INAPVTPNVS  60
SISSTSTELP ADDYQQEKKV NQQDGEQDQD KYKKQLKPKR KNQKGKREPR FAFMTKSEID  120
HLDDGYKWRK YGQKAVKNSP FPRSYYRCTT TSCGVKKRVE RSIQDTSIVV TTYEGTHTHS  180
CPVMPRGYAG VHPVTINYGV SIGAGDSGGR TYYGDSSLFS TNNLLQERRF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-28112183778Probable WRKY transcription factor 4
2lex_A9e-28112183778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352739.13e-79probable WRKY transcription factor 48
SwissprotO229005e-50WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2G3CHY01e-169A0A2G3CHY0_CAPCH; Putative WRKY transcription factor 23
STRINGSolyc05g053380.2.11e-78(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.14e-44WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]