PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g16380

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 161aa MW: 18865.1 Da PI: 10.039

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g16380	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.9	1.2e-13	17	58	9	49
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 ++ t+ kR + + KKA+ELS+LCd+ev +i fs+ + ++ + CA05g16380 17 KKATLEKRFQSLCKKAKELSILCDTEVGIIAFSHAeNDIFAW 58 6789*****************************851455555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.484	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-4	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.27E-13	6	89	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-11	15	53	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MTKKGVRTTR NLDSKIKKAT LEKRFQSLCK KAKELSILCD TEVGIIAFSH AENDIFAWPS 60 VIQAIDRVKN YLACVETKKP VKFQKHETYL QSILDAQEKY IDQMEQNVEK MEMENLFREL 120 VNARKRFDEL EDREIKGLLK LFAVKRTKLE EKKKQLKQNI *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016574388.1	1e-113	PREDICTED: agamous-like MADS-box protein AGL8 homolog
TrEMBL	A0A1U8GZZ8	1e-112	A0A1U8GZZ8_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2ZJJ5	1e-112	A0A2G2ZJJ5_CAPAN; agamous-like MADS-box protein AGL8 homolog
STRING	PGSC0003DMT400014105	3e-52	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	2e-17	AGAMOUS-like 96