PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g17430

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 290aa MW: 32992.8 Da PI: 6.1577

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g17430	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	23.2	8.7e-08	9	32	19	42
HHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 19 gilKKAeELSvLCdaevaviifss 42 ++K A+ELS+LC++ va+ii+ + CA05g17430 9 SLIKSAKELSTLCNVVVALIIMCP 32 689******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	8.521	1	30	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-10	6	76	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-5	9	32	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGLSEKVGSL IKSAKELSTL CNVVVALIIM CPGETTPITW PKETDVQNAL TRFESYSDYE 60 RSKKLDEHET YLSKKLDEQK RRIKKIERKN KEKIMEIKSN QLFEMGSRYD KLGAKEIKEL 120 LKLSRLTRAK LNERKKQFNQ QFQTSQPPLL SSNSEQTTQD CLGQNNYFQF GGASTSLVQT 180 TQPLIEDHLG QNNYFQSGSA STSLVQTTQP PTEDYLGQNN YFQIRGTSTS LGQTSQPPLH 240 PYNFESTVEN YLCQNNNIQI GDASTSLVDE SDSNRWPIEG HDDWSYFFP*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G2ZJW4	0.0	A0A2G2ZJW4_CAPAN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.3	3e-09	M-type_MADS family protein