PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g17450
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22352.3 Da    PI: 4.5795
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g17450genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.82.5e-075351343
                HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsst 43
                +s R + + KKAeEL +L d+ va+iif s 
  CA05g17450  5 LSERIASLSKKAEELYTLYDIIVALIIFTSG 35
                689999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.09E-7559IPR002100Transcription factor, MADS-box
PfamPF003195.2E-6635IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAKNLSERIA SLSKKAEELY TLYDIIVALI IFTSGETIPF VWPNEAKAMA SVLWYFSHTR  60
DERLEGLVEC ETFLSHKLEE KMKNIRKIEQ KIEEREMEIM FNKLYDGEIN LNELDAREIK  120
GLQKMFALIR AKLDEREKQL AEQSQTSQPP SILSNCETTI ENDVDQSDNF YGWCASTSLV  180
GGSSDGHGPI AHRDE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574412.11e-136PREDICTED: uncharacterized protein LOC107872141
TrEMBLA0A1U8GT261e-135A0A1U8GT26_CAPAN; uncharacterized protein LOC107872141
STRINGXP_009622555.12e-38(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.12e-06AGAMOUS-like 38