PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g17460
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 86aa    MW: 9932.68 Da    PI: 10.1102
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g17460genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.15.4e-097321742
                HHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF 17 rngilKKAeELSvLCdaevaviifss 42
                 + ++K A+ELS+LC++ va+ii+ +
  CA05g17460  7 IASLIKSAKELSILCNVVVALIIMCP 32
                5789*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.026130IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-10576IPR002100Transcription factor, MADS-box
PfamPF003191.3E-6933IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MDLSEKIASL IKSAKELSIL CNVVVALIIM CPGKTTPITW PKEIDVRNAL TRFESYSEYE  60
RSKKFDEHKK YLSRKLDEQK KKKKN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163514.12e-20PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLA0A2G2ZJV42e-54A0A2G2ZJV4_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000918407e-20(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-10M-type_MADS family protein