PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g18640
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 234aa    MW: 26775.8 Da    PI: 10.1859
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g18640genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.57.3e-391373262
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                +e+alkcprC stntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+s
  CA05g18640 13 PENALKCPRCASTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRS 73
                7899*****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31166IPR003851Zinc finger, Dof-type
PfamPF027012.5E-321571IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.451771IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTERARLAKI PQPENALKCP RCASTNTKFC YYNNYNLSQP RHFCKTCRRY WTRGGALRNV  60
PVGGGCRRNN KRSSKRSRST KSPNRSDQRS RNNVPTISTS TITFPSHLPL PNTSTHLSFL  120
NTPFHNLNDF NSTQNDMNFG EIQSHEGDGR FIDQFRLQQM QQFSFFPPLE QQPSNLYPIS  180
EFGISHDLEN VKVEENKSSI NSQGMNLQRN NTLGVNQFWI DYNISSTSTS QLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574549.11e-173PREDICTED: dof zinc finger protein DOF3.6
SwissprotQ9M2U13e-52DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A1U8H2B11e-171A0A1U8H2B1_CAPAN; dof zinc finger protein DOF3.6
TrEMBLA0A2G2ZKD61e-172A0A2G2ZKD6_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000602161e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.14e-47OBF-binding protein 3