PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g19360

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 193aa MW: 21960.3 Da PI: 5.6322

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g19360	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.2	2.1e-14	101	145	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky CA05g19360 101 PWTEEEHRLFLIGLEKYGKGDWRSISRNVVVSRTPTQVASHAQKY 145 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.9	1	52	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	7.664	1	48	IPR017884	SANT domain
SuperFamily	SSF46689	3.16E-9	4	56	IPR009057	Homeodomain-like
CDD	cd00167	8.57E-5	4	46	No hit	No description
PROSITE profile	PS51294	22.464	94	150	IPR017930	Myb domain
SuperFamily	SSF46689	3.04E-17	96	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-18	97	149	IPR006447	Myb domain, plants
SMART	SM00717	7.7E-12	98	148	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-12	98	144	IPR009057	Homeodomain-like
CDD	cd00167	1.45E-10	101	146	No hit	No description
Pfam	PF00249	3.5E-12	101	145	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSIWSRNDDK LFENALVLYP ENIADRFQLI ADYVPGKSID DIMAHYDDLV HDVFEIDSGR 60 IEFPGYTDDD SGRVELEGHS GRVELEGDSG RVSAERKKGT PWTEEEHRLF LIGLEKYGKG 120 DWRSISRNVV VSRTPTQVAS HAQKYFIRQQ AMKKERKRSS IHDITTAVDT NTVPPQSSLQ 180 NQRGTQNFNF AQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ243339	1e-109	AJ243339.1 Lycopersicon esculentum mRNA for I-box binding factor (LeMYBI gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016573777.1	1e-142	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-56	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A1U8GR70	1e-141	A0A1U8GR70_CAPAN; Transcription factor MYB1R1
TrEMBL	A0A2G2ZKM7	1e-141	A0A2G2ZKM7_CAPAN; transcription factor DIVARICATA-like
STRING	PGSC0003DMT400060403	1e-107	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4547	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-67	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]