PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA05g20280

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 360aa MW: 40213.5 Da PI: 6.951

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA05g20280	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H CA05g20280 157 YECKTCNRTFSSFQALGGHRASH 179 99**********99999998887 PP
2	zf-C2H2	14.3	0.00012	253	275	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H CA05g20280 253 HTCSYCGAEFTSGQALGGHMRRH 275 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.05E-6	154	186	No hit	No description
Pfam	PF13912	3.5E-13	156	181	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	12.237	157	184	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.063	157	179	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	159	179	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.9E-4	251	277	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.3E-6	251	278	No hit	No description
PROSITE profile	PS50157	10.367	253	280	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0079	253	275	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.6E-11	253	277	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	255	275	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEEAPREEVM GVSKGKRTKR VRPQSLIPFM MISAHSSSTG DGNNDGMVHE EISIVNNNNY 60 NNNNSSPPPA TSDENFPDEE VGPTEEEEET AKCLILLSQG GSQGGHHPYH HHHQTPPIKF 120 FDLFNDDMGL YQPKFNSKKY VETTDLGNGA KAGTYVYECK TCNRTFSSFQ ALGGHRASHR 180 KPKPLTIEPK KQPFFYFSYQ DDPSPTTTTT TPNYKHYNKL LSPTLSPLST QFSNINMDST 240 PNYNKSLPSP RIHTCSYCGA EFTSGQALGG HMRRHRGGAN TNNTILCLSP LSIDQESTNY 300 NLKKPRNGLS LDLNFPAPQE YQNHPPKYPQ EQAQKQQQEQ EQETALVLST TPQLIGCHY*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEEAPREEVM GVSKGKRTKR VRPQSLIPFM MISAHSSSTG DGNNDGMVHE EISIVNNNNY  60
NNNNSSPPPA TSDENFPDEE VGPTEEEEET AKCLILLSQG GSQGGHHPYH HHHQTPPIKF  120
FDLFNDDMGL YQPKFNSKKY VETTDLGNGA KAGTYVYECK TCNRTFSSFQ ALGGHRASHR  180
KPKPLTIEPK KQPFFYFSYQ DDPSPTTTTT TPNYKHYNKL LSPTLSPLST QFSNINMDST  240
PNYNKSLPSP RIHTCSYCGA EFTSGQALGG HMRRHRGGAN TNNTILCLSP LSIDQESTNY  300
NLKKPRNGLS LDLNFPAPQE YQNHPPKYPQ EQAQKQQQEQ EQETALVLST TPQLIGCHY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016574825.1	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A2G2ZKU4	0.0	A0A2G2ZKU4_CAPAN; Uncharacterized protein
STRING	Solyc05g055500.1.1	1e-168	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	4e-41	C2H2 family protein